Pneumonia

Pneumonia

 “Pneumonia is called the old man’s friend because, left untreated, the sufferer often lapses into a state of reduced consciousness, slipping peacefully away in their sleep, giving a dignified end to a period of often considerable suffering.” -Dr John Pillinger

Pneumonia is a major cause of morbidity and mortality worldwide, the 6th largest cause of death in the USA. It is also economically costly in antibiotics, time off work, and hospitalisation

In half the cases the cause is not identified

In those where a cause is identified, S. pneumoniae is the most common cause

The reservoir is usually humans (oneself or a contact) 

spread is through respiratory droplets

Community acquired eg Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, Mycoplasma pneumoniae, Chlamydia pneumoniae

Noscomial (hospital acquired) eg Enterobacteriaceae, Staphylococcus aureus, Anaerobes, Pseudomonas aeruginosa

Many patients have an underlying condition, e.g. bronchitis, asthma, a viral infection, tumours

Characterised by the alveolar sacs filling up with pus, giving rise to a purulent sputum

Symptoms

Results in chest tightness or pain, difficulty in breathing, fever or hypothermia, reduced blood oxygen, coughing to clear mucus, chest will sound “dull” when tapped, tachypnea, tachycardia (>100 bpm) or bradycardia (< 60 bpm), central cyanosis, altered mental status.

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Streptococcus pneumoniae: Rust-colored sputum

Pseudomonas, Haemophilus, and pneumococcal species: May produce green sputum

Klebsiella species pneumonia: Red currant-jelly sputum

Anaerobic infections: Often produce foul-smelling or bad-tasting sputum

Diagnosis

X-ray showing infiltrates

Elevated temperature

Changes in WBC counts

Culture confirmation

Serum chemistry panel

Arterial/venous blood gas 

Serum free cortisol value and lactate level

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Treatment

Intensive treatment, potentially to ITU level

Tailored antimicrobials if possible - limited options with viruses

Treatments include: analgesia and antipyretics, physiotherapy,  bronchodilators and N-acetylcysteine, suctioning and bronchial hygiene, ventilation 

Pathogenesis 

Causative agents can enter the lungs through inhalation, aspiration, spread across mucous membrane (some viruses), haematogenous spread (occasionally, e.g. IV drug users with S. aureus septicaemia) and penetrating injury (rare).

Immune response is triggered in the lung and there are local defence factors in the respiratory secretions

Cilia, if functioning, will move material up the respiratory tract, but if damaged this physical defence is impaired

The lungs also have a resident macrophage population (alveolar macrophages) but they are of limited use against several respiratory pathogens that possess a capsule

some organisms can even replicate in these cells

Damage to the lung is caused by the microbes and the immune response

 Enzymes released by the bacteria

Factors released by immune cells that cause local irritation and cell apoptosis

Systemic manifestations follow eg

Oxygen deprivation – thickening of the membranes reduces gas transfer

Systemic shock – especially with Gram-negative bacilli such as Haemophilus influenzae

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More Posts from T-b-a-blr-blog and Others

6 years ago
Some General Resources:

Some general resources:

Chemistry Glossary

Chemistry Exam Survival Guide

Toolbox – interactive graphing, tables, and calculators

Make virtual chemistry models

Interactive periodic table

Another site for making virtual chemistry models

Virtual labs – covers stoichiometry, thermochemistry, eq1uilibrium, acid base chemistry, solubility, oxidation/reduction and electrochemistry, analytical chemistry/lab techniques

Concept tests

Chemistry Science Fair Project Ideas

OChem Reaction Bank

Interactive chem simulations

Chemical calculations

The Chem Blog

Molecule of the day

Free chemistry drawing software

Laboratory Safety - Laboratory safety for the chemistry classroom

Periodic Table of Videos - Brady Haran

On this day in chemistry… - a history of chemistry

The faces of chemistry

Experimentation hub -  explore and enjoy our experiments to increase engagement in scientific investigation, develop new skills and enhance your knowledge.

Understanding journals - including reading articles, referencing, and example articles.

Resources for specific topics:

Stochiometry – the mole, molarity and density, reaction stoichiometry and limiting reagents, empirical formula and mixtures, gravimetric analysis

Themochemistry – energy and enthalpy, entropy

Kinetics – phenomenological and mechanistic kinetics

Equilibrium – LeChatlier’s principle, progress of reaction, equilibrium calculations, common ion effect

Acid base chemistry – strong acid and bases, weak acids and bases, buffer solutions, acid/base titrations

Solubility – solubility product, solubility and PH, common ion effect

Oxidation/Reduction and Electrochemistry – standard reduction potentials, galvanic cells

Analytical chemistry/ Lab techniques – reaction stoichiometry and limiting reagents, acid/base titrations, redox titrations, gravimetric analysis, UC/Vis spectroscopy

Physical chemistry – quantum mechanics, spectroscopy

Properties of solutions – intermolecular forces, colligative properties

Textbooks:

Chemistry Virtual Textbooks, Stephen Lower

Organic Chemistry, Tim Soderberg

Organic Chemistry I, George Mhehe

Environmental Chemistry, Dejene Tessema

Virtual Organic Chemistry

Industrial Chemistry, Helen Njenga

Inorganic Chemistry, Chrispin Kowenje

Physical Chemistry I, Onesmus Munyaki

General Chemistry, Principles, Patterns and Applications

Chemistry Books - a variety of chemistry textbooks

Chemistry Tutorials/Guides:

Atoms, Molecules, and Ions

Chemical reactions and stoichiometry

Electronic structure of atoms

Periodic table

Chemical bonds

Gases and kinetic molecular theory

State of matter and intermolecular forces

Chemical equilibrium

Acids and bases

Acid base equilibria and solubility equilibria

Thermodynamics

Redox reactions and electrochemistry

Kinetics

Nuclear chemistry

Organic Chemistry Tutorials/Guidelines:

Structure and bonding

Dot structures

Hybridization

Bond-line structures

Electronegativity

Resonance and acid base chemistry

Counting electrons

Resonance structures

Organic acid-base chemistry

Alkanes, cycloalkanes and functional groups

Naming alkanes

Naming alkanes, cycloalkanes, and bicyclic compounds

Conformations of alkanes

Conformations of cycloalkanes

Functional groups

Stereochemistry

Chirality

Enantiomers

Stereoisomeric relationships

Subsituation and elimination reactions

Free radical reaction

Sn1 vs Sn2

Nucleophilicity and basicity

Elimination reactions

Sn1/Sn2/E1/E2

Sn1 and Sn2

Alkenes and alkynes

Naming alkenes

Alkene reactions

Alkene nomenclature

Alkene reactions

Naming and preparing alkynes

Alkyne reactions

Alcohols, ethers, epoxides, sulphides

Alcohol nomenclature and properties

Synthesis of alcohols

Reactions of alcohols

Nomenclature and properties of ethers

Synthesis and cleavage of ethers

Nomenclature and preparation of epoxides

Conjugation, Diels-Alder, and MO theory

Addition reactions of conjugated dienes

Diels-Alder reaction

Molecular orbital theory

Aromatic compounds

Naming benzene derivatives

Reactions of benzene

Aromatic stability

Electrophilic aromatic substitution

Directing effects

Other reactions and synthesis

Aldehydes and ketones

Introduction to aldehydes and ketones

Reactions of aldehydes and ketones

Carboxylic acids and derivatives

Naming carboxylic acids

Formation of carboxylic acid derivatives

Nomenclature and reactions of carboxylic acids

Nomenclature and reactions of carboxylic acid derivatives

Alpha carbon chemistry

Formation of enolate anions

Aldol condensations

Amines

Naming amines

Spectroscopy

Infrared Spectroscopy

UV/Vis Spectroscopy

proton NMR

Careers:

A future in Chemistry

What can I do with my chemistry degree?

Chemistry Careers - American Chemical Society

What to do with a degree in chemistry - The Guardian

6 years ago
Ketone Bodies Are Produced In The Liver And Can Be Used As An Energy Source In The Mitochondrial Of Peripheral

Ketone bodies are produced in the liver and can be used as an energy source in the mitochondrial of peripheral tissues. Important fact: RBCs can not use ketones because they lack mitochondria.

The liver is unable to peform Ketolysis because it lacks Thiophorase (Succinyl-CoA Acetoacetate Transferase), and is hence unable to activate its own ketones.

6 years ago

Elek test to document toxi production of Corynobacterium diphteriae

6 years ago

How to remember Lysteria monocytogenes tumbling motility?

MICROBIOLOGY MNEMONIC

So, Lysteria rhymes with Hysteria, and when I think of hysteria I think of someone dancing Hysterically…..(actually, me dancing hysterically..)

I also googled Hysteria, and found this:

image

HYSTERIA RADIO!

So here it goes: “Lysteria dances to  Hysteria Radio”

If I don’t come up with all these silly associations my brain melts and confuses all the freakin bacterias, so bear with me…

6 years ago

Killed, inactivated Vaccines Available in the US

Killed vaccines induce only HUMORAL immunity

RIP   ACE 

image

R abies

I nfluenza (injected)

P olio (salk)

.

A Hepatitis

C holera 

E ncephalitis viruses (eg Japanese encephalitis)

6 years ago
Microbio Lab Work 📖
Microbio Lab Work 📖
Microbio Lab Work 📖
Microbio Lab Work 📖

Microbio lab work 📖

6 years ago

study tip request: studying on public transport (or sth related like how to know what to record when you record yourself saying notes so that you can listen to them on public transport)

Best Way to Make Study Recordings for Yourself

Testing yourself is the most effective way to learn a topic, so this one is fairly straightforward. For recording:

Formulate an examination style question, and run through the answer in your head, organising your thoughts. 

Then record the question, and mouth silently the answer fluently (reason being that just thinking in your head may result in too little or too much silence. 

Leave a few extra seconds of silence for thinking time (~3-5 seconds). 

Answer the question aloud in the recording (I’d suggest a brief one)

Rinse and repeat until you have enough to last you the whole commute. 

Hope that helps! For more tips on how to spend time on commutes, check out my post on Staying Productive No Matter How Much Time You Have :)

Study Tip Request: Studying On Public Transport (or Sth Related Like How To Know What To Record When
6 years ago
Recurrente Infections With Catalase Positive Organisms In Chronic Granulomatose Disease (CGD)

Recurrente infections with catalase positive organisms in Chronic Granulomatose Disease (CGD)

6 years ago

My revised pnemonic for ADP ribosylation A-B toxins

Boring     and      serious      people score high in usmle…

Bordetella pertussis and B.cereus  increases   cAMP by inhibiting Gi

Cool    and     Vibrant   people  also score high…

E. coli  and Vibreo cholerae increases cAMP by  activating Gs

Exception: Please please please remember that  Bacillus anthracis has an edema factor which it self acts as adenylate cyclase…. no ADP ribosylation involved..so hence  cAMP level increases.

6 years ago
Microbiology Mnemonics
Microbiology Mnemonics
Microbiology Mnemonics
Microbiology Mnemonics
Microbiology Mnemonics
Microbiology Mnemonics

Microbiology Mnemonics

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